Reproducible Aspergillus niger (iJB1325, ATCC 1015) genome-scale pilot: real FBA + carbon guardrail, license-clean. Renamed from ijb1325-ecoli-pilot after verifying the model organism is A. niger.
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Oct 9, 2026 - Python
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aspergillus-niger
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Unified Aspergillus niger virtual-microbe pilot: two model scales (iJB1325 genome-scale BiGG + in-house curated CCM) plus an annotation crosswalk, with one fail-closed verify.py covering all three layers (12 hard checks). MIT for code/CCM; iJB1325 under the BiGG non-profit licence.
synthetic-biology flux-balance-analysis genome-scale-model metabolic-modeling aspergillus-niger citric-acid
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Oct 9, 2026 - Python
Production and optimization of garbage enzymes for textile dye decolorization — Laccase assay · Plackett-Burman Design · Solid-State Fermentation · Aspergillus niger
bioinformatics fermentation biotechnology wastewater-treatment solid-state-fermentation laccase-enzyme plackett-burman aspergillus-niger dye-decolorization
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May 1, 2026
A. niger curated CCM virtual-microbe pilot (VitaMind series). Real BIOMASS reaction, verifiable carbon guardrail (28 rxn / 24 met / 17 gene), and the phosphate-switch citrate phenotype (citrate 6 -> 12). MIT licensed.
synthetic-biology cobra flux-balance-analysis genome-scale-model metabolic-modeling aspergillus-niger
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Oct 9, 2026 - Python
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