Feature map and function annotation of Proteins

R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

Parse consecutive matches in BLAST results.

Unraveling Evolutionary Relationship between Fungi Species

This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.

PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

Modeling chromosomal gene location by protein composition

This project applies bioinformatics techniques to analyze biological sequences, including protein structure prediction, sequence alignment, and comparative genomics using tools like BLASTP, AlphaFold3, and BioPython. It combines algorithmic methods with practical applications in computational genomics.

BLAST without Sys.Call()

Using BLAST and Transdecoder.

This repository hosts the production build of the BrassicaLnc frontend for deployment via GitHub Pages. It delivers the public website for exploring Brassica napus long non-coding RNA data, including expression profiles, lncRNA–miRNA interactions, and TE associations.

R wrapper for running offline BLASTp alignments on curated protein sequence pairs. Originally built for personal use, now being developed into a reusable package for broader community use.

Pipeline to get a protein's residues conservation JSD scores

Colab notebooks for searching for proteins in biological databases based on sequence similarity using BLAST.

Scripts to run benchmarks of BLAST and PLAST on a supercomputer

To classify plant ado-keto reductase-domain (PF00248) containing proteins via blastp search

This repository provides a reproducible pipeline for phylogenetic analysis using Nextflow, BLASTP, CD-HIT, MAFFT, trimAl, and IQ-TREE. The workflow supports automated BLAST search, clustering, alignment, trimming, and tree inference for protein.