End-to-end scRNA-seq + AI pipeline for melanoma TME biomarker discovery. CD79A validated in TCGA-SKCM (n=314, Log-Rank p=0.0044, +18.1 months OS).
Bulk RNA-seq analysis of FTO overexpression in OVCAR-5 ovarian cancer cells using Salmon, tximport, DESeq2, and functional enrichment analysis.
Comprehensive notes, workflows, and projects from 2025 research trainings on 16S rRNA, scRNA-seq, Nextflow, Galaxy, plant & marine genomics, and cancer bioinformatics, including hands-on Galaxy and reproducible pipeline .
Computational drug discovery project using molecular docking, virtual screening, and ADME analysis to identify plant-derived DNMT1 inhibitors against colorectal cancer using AlphaFold, AutoDock Vina, PyRx, SwissADME, TCGA, and CPTAC datasets.
Implementation of a Bioinformatics Strategy Applied to Clear Cell Renal Cell Carcinoma (ccRCC)
Bulk RNA-seq analysis of cisplatin resistance progression and RRBP1-associated transcriptional changes in oral squamous cell carcinoma (OSCC).
Multi-cohort HNSCC analysis of a three-gene mitochondrial adaptive tumor state using survival modeling, immune deconvolution, pathway analysis, external validation, and scRNA-seq.
Bulk RNA-seq analysis of TCGA-LUAD using R, including differential expression, pathway enrichment, GSEA, and survival analysis.
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