chris-app

Quality Assessment tool for fetal brain MRIs, able to score each volume through a deep learning regression model. Developed using Python3 and Keras/Tensorflow framework.

A ChRIS DS plugin to convert from medical image data files to display-friendly formats (like png and jpg).

A quick "hack" plugin for freesurfer

Extract surface meshes from in-utero MRI

An app to predict segmented brain MRI images from a given unsegmented brain MRI

Automatic masking of fetal brain images using deep learning

A 3D U-Net effective for Brain MRI segmentation

Interactive digital catalog and product showcase web application, optimized for fast performance and deployed on Netlify.

An app to efficiently perform cortical parcellation and segmentation on raw brain MRI images

A Chris 'ds' plugin to retrieve file/folders from Amazon S3 service.

A Chris 'ds' plugin to push files/folders in input directory to Amazon S3 service.

An app that pulses system information periodically.

A GPU-aware matrix multiplier. Useful mainly for testing/benchmarking.

IRTK fetal brain MRI reconstruction. https://pubmed.ncbi.nlm.nih.gov/22939612/

An app to decode labels from encoded brain MRI images

A DS plugin to convert NIfTI input to DICOM output

A plugin app for Freesurfer reconstruction of brain surfaces. Very early WIP

Pre-populated "dummy" plugin that copies some contained prior FreeSurfer run to output