This repo is about my 1 week research about protein residue sequence residue-residue contact map prediction
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Feb 27, 2025 - Jupyter Notebook
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contact-maps
Here are 5 public repositories matching this topic...
Protein contact map quality estimation by evolutionary reconciliation
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Jul 21, 2022 - Python
Open hotspot-guided de novo protein binder design pipeline integrating OpenMM, BindCraft, ProteinMPNN, and AlphaFold2.
computational-biology structural-bioinformatics immuno-oncology protein-protein-interactions alphafold2 contact-maps de-novo-protein-design bindcraft proteinmpnn protein-binder-design hotspot-mapping oncogenic-interfaces
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Feb 26, 2026 - Jupyter Notebook
It turns out, fractals can be used in this way too) Let’s pour all the colors and comforts of our life into a visual branching of our contacts!
visualization javascript css html ui interactive data-visualization fractals tree-layout contact-maps
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Mar 1, 2026 - HTML
ProtPlot is a tool written in Python used to plot protein contact maps
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Jan 8, 2023 - Python
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