SNMF: Integrated Learning of Mutational Signatures and Prediction of DNA Repair Deficiencies by Goossens S, Tepeli YI, Seale C, and Gonçalves JP (bioRxiv 2024)
Biologically informed deep learning to query gene programs in single-cell atlases
Agentic gene perturbation prediction system for the MLGenX BioReasoning Challenge – Track B.
MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis by Seale CF, Barazas M, van Schendel R, Tijsterman M, and Gonçalves JP (NAR Genomics and Bioinformatics 2025)
RNA-seq analysis pipeline for Brent lab (WUSTL)
虚拟小鼠 vmouse · IGFBP4 基因扰动数据包:LINCS/DepMap/IMPC/STRING 等真实公开数据检索+富集(非预测)
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