Pipeline-aware CPU, memory, and I/O monitoring for ancient DNA and metagenomic classification workflows — per-step CSVs and detailed comparison plots.
PalaeoKin is a lightweight ancient-DNA pipeline for estimating pairwise relatedness from mapped BAMs at low/uneven coverage. It wraps ANGSD + NgsRelate (KING-robust kinship, R0/R1) and samtools, producing a clear summary plus PDF/SVG QC plots, with optional downsampling and allele-balance/mixture diagnostics.
TackleBox is a collection of module tools for targeted ancient DNA research.
RxSexID infers biological sex from mapped reads using the Rx statistic (Skoglund et al. 2013): the ratio of X-chromosome coverage to an autosomal baseline for ancient and degraded DNA
A semi-random collection of small, useful tools for ancient DNA bioinformatics, plotting, and file summaries.
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