Nextflow pipeline for estimating relative changes in transcription elongation, splicing, and RNA decay kinetics from total RNA-seq data.
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Updated
Oct 20, 2026 - Python
Nextflow pipeline for estimating relative changes in transcription elongation, splicing, and RNA decay kinetics from total RNA-seq data.
In this module, you will learn how to perform the bioinformatics analysis of differential chromatin occupancy using data generated by three well-known high-throughput sequencing assaying, including differences between them and integration of chromatin accessibility and differential gene expression
Nonlinear regression using to estimate kinetics constants of DNA promoter opening and escape during transcription initiation complex assembled between Lambda PR promoter and E. coli RNA polymerase.
Modular Python pipeline for identifying RNA Polymerase IV (NRPD1) orthologs in plant genomes. Features BLAST+ integration, custom domain analysis, and a JSON-configurable rule-based validation system for Pol II/IV/V distinction.
Nextflow pipeline for estimating relative changes in transcription elongation, splicing, and RNA decay kinetics from total RNA-seq data.
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