Ternary compositional pipeline that quantifies whether tumors selectively co-opt extraembryonic (trophoblast) programs rather than embryonic-proper pluripotency, and identifies the master TFs driving each direction.

Single-cell RNA-seq analysis of melanoma immunotherapy response - scanpy, Harmony integration, cross-validated response signatures (AUC 0.83)

Reproducibility repository for a single-cell analysis of cardiac ion-channel expression across cell type and development, relevant to anti-Ro/SSA congenital heart block.

Single-cell RNA-seq and TCR repertoire analysis workflows for paediatric immune ageing using Scanpy, scVI, Milo and Dandelion.