a reproducible and scalable workflow for prokaryote genomic data analysis designed for the genera Enterococcus spp.
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Mar 29, 2021 - Python
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virulence-factors
Here are 7 public repositories matching this topic...
An interactive and user-friendly web application to explore the hospital microbiome and genetic makeup
metagenomics bioinformatics-pipeline pathogens antimicrobial-resistance mobile-genetic-elements r-shiny-app virulence-factors hospital-microbiome
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Nov 3, 2025 - R
An R shiny application to explore the chicken gut microbiome and their genetic makeup
mobile-genetic-elements antibiotic-resistance-genes virulence-factors chicken-gut-microbiome zoonotic-pathogens dietary-interventions
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Mar 30, 2026 - R
Curated genomic database of Staphylococcal Pathogenicity Islands (SaPIs), mobile genetic elements in Staphylococcus aureus that contribute to virulence through carriage of enterotoxin and other virulence-associated genes.
bioinformatics genomics wgs food-safety mobile-genetic-elements staphylococcus-aureus virulence-factors bacterial-genomics sapis pathogenicity-islands enterotoxins
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Apr 30, 2026
Pangenomic structural analysis of bacterial secretion machineries across Streptococcus pneumoniae isolates using optimized TXSScan hidden Markov models.
computational-biology bioinformatics-pipeline proteomics comparative-genomics hidden-markov-models pangenomics virulence-factors streptococcus-pneumoniae protein-translocation macsyfinder secretion-systems pan-secretome bacterial-pathogenesis txsscan
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Apr 12, 2026 - Python
Curated genomic database of Staphylococcus aureus virulence factors, including enterotoxins, adhesins, and immune evasion genes. These determinants enable host colonisation, immune evasion, and tissue damage, forming the basis of pathogenic potential.
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Apr 30, 2026
In silico PCR reference-based method for detecting microbial sequences.
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Dec 15, 2025 - Python
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