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Welcome to the transmart developer wiki!

The first release from this new repository has a working title of tranSMART version 19.0. The version has been updated to match the version(s) of i2b2-tranSMART appearing around the same time.

Main application

transmartApp

Plugin components

Plugin	Dependencies	Notes
transmart-core-api	(none)
transmart-shared
transmart-legacy-db
transmart-fractalis
mydas		maven build
dalliance-plugin
transmart-core-db	transmart-core-api + transmart-shared
transmart-core-db-tests	transmart-core-api + transmart-core
transmart-mydas	transmart-core-api + mydas
transmart-java
biomart-domain	transmart-java
search-domain	transmart-shared + biomart-domain
transmart-rest-api	transmart-core-api + transmart-shared + transmart-core + transmart-core-tests
transmart-custom	transmart-shared + search-domain
folder-management-plugin	transmart-core + search-domain
Rmodules	transmart-core-api
spring-security-auth0	transmart-shared + transmart-core + search-domain + transmart-custom
IpaApi		maven build
SmartR	transmart-core-api + transmart-core + transmart-core-tests + IpaApi
galaxy-export-plugin	transmart-shared + transmart-legacy-db + Rmodules
transmart-metacore-plugin	transmart-shared
transmart-xnat-viewer	transmart-core-api + search-domain
transmart-xnat-importer-plugin	transmart-shared + biomart-domain
transmart-gwas-plugin	transmart-shared + transmart-core + transmart-legacy-db + search-domain + folder-management-plugin + Rmodules
transmart-gwas-plink

Additional components

Component	Category	Notes
GWAVA	transmartApp	GWAVA viewer for GWAS analysis
RInterface	Scripts to test and demonstrate the REST-API
Scripts	Scripts to install a release distribution on clean Ubuntu and other systems
transmart-data	Database and ETL	Creating a new database and defining ETL targets
transmart-etl	ETL and loader	Kettle scripts and dictionary loader
transmart-ICE	ETL	Sanofi ICE tool (formerly FCL4TRANSMART)
transmart-test	testing	Functional tests for the UI using Geb/Selenium