Bump for bioconda release

This release includes packaging and usability updates to improve installation and execution of Somatem.

Highlights

• Added an upstream somatem launcher script

  • Somatem can now be launched through a dedicated command-line entrypoint rather than only through direct nextflow run . ...
  • This improves consistency across local development, GitHub source installs, and Conda-based installs.

• Improved Bioconda packaging support

  • Packaging has been updated to better support installation through Bioconda.
  • The launcher is now part of the upstream repository, which simplifies downstream packaging and follows established patterns used by similar workflow projects.

• Improved installed pipeline path handling

  • Repo-internal config and bundled resource paths were updated so Somatem works more cleanly when installed into a Conda environment.
  • This helps preserve access to bundled assets such as example parameter files and configuration files after installation.

Notes

This is a packaging and installability update and does not introduce major workflow logic changes.

somatem : first public release, beta mode

What's Changed

• Cleanup by @ppreshant in #78
• Cleanup README and improve cloning instructions with submodule info by @ppreshant in #83
• update emu to v3.6.1 and add subworkflow specific yamls by @microbemarsh in #87
• Clarify whitespace-stripping comment in sanitize_taxonomy_for_taxburst by @Copilot in #89
• make taxburst_prep.py more robust by @microbemarsh in #88
• Making hostile run conditional: sample_environment =~ /human/ && data_type != "16S" by @ppreshant in #95

Full Changelog: https://github.com/treangenlab/Somatem/commits/v1.0.0