This code contains all the scripts to run the analyses of the scMRA/scCNR manuscript. You can find the scMRA/scCNR algorithm together with tutorials how to use it here: https://github.com/ibivu/scmra
This repository is organized in the following way:
- data: contains the simulated date (wt, BRAFmut, RASmut, missing total proteins with and without perturbations) as well as the processed data of the scID-seq experiment
- paper_analyses: contains all the scripts for the evaluation of 1.) scMRA, 2.) scCNR, and the evaluation of 3.) the scID-seq data.
- simulations: contains the simulations of the wt, BRAFmut and RASmut cell populations for the evaluation of scMRA, scCNR