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Full-corpus build, CLI, documentation, and two corrected results - #1

Merged

adam-amara merged 6 commits into

mainfrom

Sep 17, 2026

Merged

Full-corpus build, CLI, documentation, and two corrected results#1
adam-amara merged 6 commits into
mainfrom
v2-full-corpus

Commits on Sep 17, 2026
- Full-corpus build, command-line client, and documentation
  Adam Amara
  committed
  d828298
- run.sh: load the graphs it builds, and explain the empty case
  Adam Amara
  committed
  898923e
- README: drop a duplicated sentence
  Adam Amara
  committed
  03c70ae
- Fix the checks that could not fail, and the defects they were hiding
  Adam Amara
  committed
  88162ad
- Document the absence of query parameters, and remove a test config that runs nothing
  Adam Amara
  committed
  ceb5162
- Atom-level fragment membership, and the corrected motif numbers
  Adam Amara
  committed
  ef55121