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Alnalyser is your helper for a reasonable work with multiple sequence alignments (in bioinformatics)!
This software is aimed to help in a daily routine work of a bioinformatician who works with multiple sequence alignments and uses them further to build phylogenetic trees. Briefly, it is a graphical interface which allows to maintain multiple projects with sequence alignment and additional data for it. First, it can map information about hits of profile HMMs from a certain database on the sequence alignment, including predictions of transmembrane elements. Also it can be used to remove poorly aligned or truncated sequences in semi-automated mode. Finally, as a small cherry on top, it has a sequence format converter which allows to convert all main sequence formats (NCBI, Uniprot, PDB etc) into more convenient format for working with multiple alignment and phylogenetic tree.
Please visit our web page for other bioinformatical tools and more info: http://boabio.belozersky.msu.ru/en/scientific-group
Creation of this tool was supported by the Dmitry Zimin's Dynasty Foundation, grant for young biologists, 2014