Add Kaiju and Gadi cluster support: pixi env, PETSc build script, and documentation - #79

Merged

jcgraciosa merged 27 commits into

underworldcode:developmentfrom

jcgraciosa:development

Mar 26, 2026

Commits on Mar 26, 2026

Added pixi env and documentation for Kaiju
Juan Carlos Graciosa
committed
031e260
Fix pixi env check and use PATH instead of PIXI_ENVIRONMENT
Juan Carlos Graciosa
committed
7afc12f
Added CC=mpicc
Juan Carlos Graciosa
committed
0f26a99
Modified PETSc MPI detection
Juan Carlos Graciosa
committed
d119a78
Fix LD_LIBRARY_PATH for spack OpenMPI
Juan Carlos Graciosa
committed
b4ded87
Add MMG_INSTALL_PRIVATE_HEADERS=ON for PARMMG (kaiju only)
Juan Carlos Graciosa
committed
bf3f42b
Disable SCOTCH in MMG build to fix PARMMG configure on Kaiju

Juan Carlos Graciosa
and
claude
committed
ad2cf34
Update kaiju cluster setup docs with shared install and troubleshooting
Juan Carlos Graciosa
committed
95a2f0e
Added info re. shared installation in Kaiju cluster
Juan Carlos Graciosa
committed
acc4c64
Added link to admin-repo
Juan Carlos Graciosa
committed
e02c009
Added pixi env for Gadi baremetal install
Juan Carlos Graciosa
committed
3d96e74
Added build-petsc-gadi script
Juan Carlos Graciosa
committed
f589fb0
Specified MPI_DIR
Juan Carlos Graciosa
committed
3975f7d
Unset conda/pixi compiler variables that interfere with mpicc
Juan Carlos Graciosa
committed
d7f1848
Removed explicit setting of MPI_DIR
Juan Carlos Graciosa
committed
104a425
Added ignoreLinkOutput
Juan Carlos Graciosa
committed
4a53c92
Added missing libraries: libucc and libnl_3
Juan Carlos Graciosa
committed
aca7762
Reordering PATH
Juan Carlos Graciosa
committed
e9775dc
Added symlink and setting LD_LIBRARY_PATH before configure runs
Juan Carlos Graciosa
committed
9709296
fix linking
Juan Carlos Graciosa
committed
a6834ac
Added OMPI_FCFLAGS
Juan Carlos Graciosa
committed
a670a2b
Added symlink to scratch for petsc; download fblaslapack
Juan Carlos Graciosa
committed
d53efaa
Updated env vars for build
Juan Carlos Graciosa
committed
8d2bd13
Added patchelf to reorder h5py RPATH after source build
Juan Carlos Graciosa
committed
2668631
Changes according to PR feedback
Juan Carlos Graciosa
committed
cb5ebfa
Changed documentation to contain info on the clusters closely supported.
Juan Carlos Graciosa
committed
93e7eac
Fixed toctree reference and rename PETSC_ARCH to petsc-4-uw-openmpi for consistency
Juan Carlos Graciosa
committed
e790765

Navigation Menu

Uh oh!

Add Kaiju and Gadi cluster support: pixi env, PETSc build script, and documentation - #79

Add Kaiju and Gadi cluster support: pixi env, PETSc build script, and documentation#79
jcgraciosa merged 27 commits into
underworldcode:developmentfrom
jcgraciosa:development

Commits on Mar 26, 2026

Added pixi env and documentation for Kaiju

Fix pixi env check and use PATH instead of PIXI_ENVIRONMENT

Added CC=mpicc

Modified PETSc MPI detection

Fix LD_LIBRARY_PATH for spack OpenMPI

Add MMG_INSTALL_PRIVATE_HEADERS=ON for PARMMG (kaiju only)

Disable SCOTCH in MMG build to fix PARMMG configure on Kaiju

Update kaiju cluster setup docs with shared install and troubleshooting

Added info re. shared installation in Kaiju cluster

Added link to admin-repo

Added pixi env for Gadi baremetal install

Added build-petsc-gadi script

Specified MPI_DIR

Unset conda/pixi compiler variables that interfere with mpicc

Removed explicit setting of MPI_DIR

Added ignoreLinkOutput

Added missing libraries: libucc and libnl_3

Reordering PATH

Added symlink and setting LD_LIBRARY_PATH before configure runs

fix linking

Added OMPI_FCFLAGS

Added symlink to scratch for petsc; download fblaslapack

Updated env vars for build

Added patchelf to reorder h5py RPATH after source build

Changes according to PR feedback

Changed documentation to contain info on the clusters closely supported.

Fixed toctree reference and rename PETSC_ARCH to petsc-4-uw-openmpi for consistency