Update install script

README.md

@@ -47,6 +47,22 @@ In order for Helixer to find this binary, it needs to be on the PATH. The easies
 the binary to the bin folder in the virtual environment which you previously created for Helixer 
 (e.g. `path_to_Helixer/env/bin` )
 
+## Ubuntu installer script
+
+Download the installer file (install_helixer_post.sh) from this repository and do the following
+
+```
+chmod +x install_helixer_post.sh
+./install_helixer_post.sh
+
+```
+After building the binary you will be prompted to create binary at a desired location, if not unsure you can simply copy paste the following
+
+```
+/usr/local/bin
+```
+
+
 ## Concept
 HelixerPost uses a sliding window assessment to determine regions of the genome which are likely gene containing.
 This is then followed by a Hidden Markov Model to convert the base class and coding phase predictions within

ubuntuInstall.sh

@@ -0,0 +1,51 @@
+#!/bin/bash
+
+# Check for Rust
+if ! command -v rustc &> /dev/null; then
+  echo "Error: Rust is not installed. Please install Rust from https://www.rust-lang.org/tools/install"
+  exit 1
+fi
+
+# Check for libhdf5-dev
+if ! dpkg -l libhdf5-dev &> /dev/null; then
+  echo "Installing libhdf5-dev..."
+  sudo apt install libhdf5-dev
+fi
+
+# Install hdf5-lzf support (Optional)
+echo "Do you want to install hdf5-lzf support (y/n)?"
+read -r install_lzf
+
+if [[ "$install_lzf" =~ ^([Yy]) ]]; then
+  # Download h5py
+  wget https://pypi.org/packages/source/h/h5py/h5py-3.2.1.tar.gz
+
+  # Extract and build lzf
+  tar -xzvf h5py-3.2.1.tar.gz
+  cd h5py-3.2.1/lzf/
+  gcc -O2 -fPIC -shared -Ilzf lzf/*.c lzf_filter.c -lhdf5 -L/lib/x86_64-linux-gnu/hdf5/serial -o liblzf_filter.so
+  sudo mkdir -p /usr/lib/x86_64-linux-gnu/hdf5/plugins
+  sudo cp liblzf_filter.so /usr/lib/x86_64-linux-gnu/hdf5/plugins
+  cd ../..
+  rm -rf h5py-3.2.1.tar.gz
+fi
+
+# Clone HelixerPost repository
+git clone https://github.com/TonyBolger/HelixerPost.git
+
+# Build HelixerPost in release mode
+cd HelixerPost
+cargo build --release
+
+# Move the binary to a directory in your PATH (e.g., /usr/local/bin)
+echo "Where would you like to install the binary (e.g., /usr/local/bin)?"
+read -r install_dir
+
+if [ ! -d "$install_dir" ]; then
+  echo "Creating directory: $install_dir"
+  sudo mkdir -p "$install_dir"
+fi
+
+sudo mv ./target/release/helixer_post_bin "$install_dir"/helixer_post_bin
+
+echo "HelixerPost has been installed successfully!"