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nextflow dev container #14

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nextflow dev container #14

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501d1eb
attempt 1 nf dev image
nickp60 Nov 24, 2025
135e217
add manifest
nickp60 Nov 24, 2025
24797fe
swap base image
nickp60 Dec 1, 2025
b8b90d5
change base from alpine
nickp60 Dec 1, 2025
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1 change: 1 addition & 0 deletions build_manifest.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -43,3 +43,4 @@ micom,0.37.0
sylph,0.6.1a
dvc,0.0.1
fmhfunprofiler,20250930
nextflow-dev,0.0.2
10 changes: 10 additions & 0 deletions nextflow-dev/Dockerfile
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@@ -0,0 +1,10 @@
FROM eclipse-temurin:25

RUN apt-get update && apt-get install curl build-essential zip wget python3 pip gradle bash git unzip python3-dev -y
#RUN /bin/bash -c "source /root/.sdkman/bin/sdkman-init.sh; sdk version; sdk install java 17.0.10-tem ; sdk install gradle 9.2.1 ; which gradle"
#ENV PATH="/root/.sdkman/candidates/java/current/bin/:$PATH"
ENV PIP_BREAK_SYSTEM_PACKAGES=1
RUN java -version && \
pip install nf-core && \
curl -s https://get.nextflow.io | bash
RUN mv nextflow /usr/local/bin/
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