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Dependency on dustdas

Status: Open.

#400 In weberlab-hhu/GeenuFF;

· anthony-aylward opened on Jul 30, 2024

Still need to implement backward match if fasta IDs are subset of gff IDs

Status: Open.

#397 In weberlab-hhu/GeenuFF;

· hjjansen opened on Apr 25, 2023

Add lenient parser mode

Status: Open.

#396 In weberlab-hhu/GeenuFF;

· alisandra opened on Jan 24, 2023

chromosomes can be longer than max string length in sqlite3 for a coordinate -> fix

Status: Open.

#395 In weberlab-hhu/GeenuFF;

· alisandra opened on May 31, 2022

How to properly deal with RefSeq pseudogenes without transcript?

bugSomething isn't workingSomething isn't working

questionFurther information is requestedFurther information is requested

Status: Open.

#393 In weberlab-hhu/GeenuFF;

· soi opened on Apr 6, 2021

Properly handle non-coding genes

database

enhancementNew feature or requestNew feature or request

Status: Open.

#392 In weberlab-hhu/GeenuFF;

· alisandra opened on Aug 27, 2020

·  

geenuff_paper

Export back to GFF3

enhancementNew feature or requestNew feature or request

Status: Open.

#391 In weberlab-hhu/GeenuFF;

· alisandra opened on Aug 27, 2020

·  

geenuff_paper

Add Prokaryotic GFF Importer

Status: Open.

#390 In weberlab-hhu/GeenuFF;

· alisandra opened on Aug 27, 2020

·  

geenuff_paper

Make sure import supports a few more common gff3 sources

Status: Open.

#389 In weberlab-hhu/GeenuFF;

· alisandra opened on Aug 27, 2020

Use efficient _genome_query and join for everything using _super_locus_query

database

housekeeping

Status: Open.

#356 In weberlab-hhu/GeenuFF;

· alisandra opened on Mar 20, 2020

Overlapping super locus error can be marked even if the individual transcript does not overlap

bugSomething isn't workingSomething isn't working

database

Status: Open.

#196 In weberlab-hhu/GeenuFF;

· soi opened on Nov 4, 2019

Error features for overlapping super loci are attached to the wrong transcript in some cases.

bugSomething isn't workingSomething isn't working

database

Status: Open.

#194 In weberlab-hhu/GeenuFF;

· soi opened on Oct 31, 2019