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ABC-units
ABC-units
 
 
R_Exercise-BasicSetup
R_Exercise-BasicSetup
 
 
.gitignore
.gitignore
 
 
0wikijournal.xml
0wikijournal.xml
 
 
10wikijournal.xml
10wikijournal.xml
 
 
191014.html
191014.html
 
 
1BM8.aln
1BM8.aln
 
 
1BM8_A.fa
1BM8_A.fa
 
 
1wikijournal.xml
1wikijournal.xml
 
 
2.txt
2.txt
 
 
2wikijournal.xml
2wikijournal.xml
 
 
3wikijournal.xml
3wikijournal.xml
 
 
4UX5.aln
4UX5.aln
 
 
4UX5_A.fa
4UX5_A.fa
 
 
4wikijournal.xml
4wikijournal.xml
 
 
5w81.pdb
5w81.pdb
 
 
5wikijournal.xml
5wikijournal.xml
 
 
6MSM.pdb
6MSM.pdb
 
 
6wikijournal.xml
6wikijournal.xml
 
 
7wikijournal.xml
7wikijournal.xml
 
 
8wikijournal.xml
8wikijournal.xml
 
 
9wikijournal.xml
9wikijournal.xml
 
 
ABC-INT-Genome_annotation.xml
ABC-INT-Genome_annotation.xml
 
 
ABC-INT-Homology_modelling.xml
ABC-INT-Homology_modelling.xml
 
 
ABC-INT-Phylogeny.xml
ABC-INT-Phylogeny.xml
 
 
APSES-MBP1.fa
APSES-MBP1.fa
 
 
APSES-MBP1_ALT.fa
APSES-MBP1_ALT.fa
 
 
APSESphyloSample.mfa
APSESphyloSample.mfa
 
 
APSESphyloSet.mfa
APSESphyloSet.mfa
 
 
APSEStreeRproml.RData
APSEStreeRproml.RData
 
 
BIN-SX-Small_molecule.xml
BIN-SX-Small_molecule.xml
 
 
BIN-Storing_data.xml
BIN-Storing_data.xml
 
 
CDC6_ERECY_DNA.fa
CDC6_ERECY_DNA.fa
 
 
ERECY-Annotations.json
ERECY-Annotations.json
 
 
ERECY_APSES_PSI-BLAST.json
ERECY_APSES_PSI-BLAST.json
 
 
MBP1_ERECY-APSES.pdb
MBP1_ERECY-APSES.pdb
 
 
MBP1_ERECY-APSES_alt.pdb
MBP1_ERECY-APSES_alt.pdb
 
 
MBP1_ERECY-APSESrenum.pdb
MBP1_ERECY-APSESrenum.pdb
 
 
MBP1_ERECY-APSESrenum_alt.pdb
MBP1_ERECY-APSESrenum_alt.pdb
 
 
MBP1_ERECY.json
MBP1_ERECY.json
 
 
MYSPEtaxonomy.json
MYSPEtaxonomy.json
 
 
Mbp1ERECY_Pfam.json
Mbp1ERECY_Pfam.json
 
 
README.md
README.md
 
 
README_residenv.md
README_residenv.md
 
 
RPR-GEO2R.xml
RPR-GEO2R.xml
 
 
asco.txt
asco.txt
 
 
atomToLookAt.json
atomToLookAt.json
 
 
atomsAlign.json
atomsAlign.json
 
 
basidio.txt
basidio.txt
 
 
cat.sh
cat.sh
 
 
chiAngleAtoms.json
chiAngleAtoms.json
 
 
closing.xml
closing.xml
 
 
emboss_needle-I20191117-050738-0877-87249423-p2m.txt
emboss_needle-I20191117-050738-0877-87249423-p2m.txt
 
 
emboss_water-I20191117-044521-0763-24891350-p1m.txt
emboss_water-I20191117-044521-0763-24891350-p1m.txt
 
 
emboss_water-I20191117-045631-0075-96632173-p1m.txt
emboss_water-I20191117-045631-0075-96632173-p1m.txt
 
 
fullfungiTree.txt
fullfungiTree.txt
 
 
fungiTree.txt
fungiTree.txt
 
 
hm.mfa
hm.mfa
 
 
hm_alt.mfa
hm_alt.mfa
 
 
infile
infile
 
 
insights.xml
insights.xml
 
 
lud.txt
lud.txt
 
 
makeProteinDB.R
makeProteinDB.R
 
 
msaT.aln
msaT.aln
 
 
msa_Mbp1.mfa
msa_Mbp1.mfa
 
 
newAPSEStreeRproml.RData
newAPSEStreeRproml.RData
 
 
opening.xml
opening.xml
 
 
outfile
outfile
 
 
outtree
outtree
 
 
residenv.tcl
residenv.tcl
 
 
sandbox.R
sandbox.R
 
 
session_HM.py
session_HM.py
 
 
session_HM.pyc
session_HM.pyc
 
 
top_all27_prot_lipid_withHIS.inp
top_all27_prot_lipid_withHIS.inp
 
 
wikijournal.xml
wikijournal.xml
 
 

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My work and notes in Wiki Journal format for the bioinformatics course (BCH1441) at UToronto from 2019.

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