Modeling Scripts: align_guide_target_seqs.py: Script for alignment of guide and target sequences to predict the binding register prior to model fitting. Parameters for alignment are estimated from single mismatch penalties.

Parameter Fitting Scripts: fitOnRates.py: Fits association rates to RNA-MaP data. cleaveAndSeqCounts.py: Counts exact matches of sequences. cleaveAndSeqFitCounts.py: Fits cleavage rates to counts data.

For questions, or additional requests, contact winstonrbecker [at] gmail.com.