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Pull requests: zaeleus/noodles

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Pull requests list

Filter CRAM queries by CRAI interval
#396 opened Jun 4, 2026 by bioflowy Loading…
sam,bam: document quality score encoding
#394 opened May 5, 2026 by werner291 Loading…
1
fasta/io/indexed_reader/builder: Add set_buffer_capacity for small perf gain
#392 opened Apr 26, 2026 by tfenne Contributor Loading…
2
perf(fasta,fastq): high-throughput parsing optimizations
#385 opened Mar 23, 2026 by nh13 Contributor • Draft
5 tasks
cram: Bring reader and writer to htslib parity for CRAM 2.0–4.0
#380 opened Mar 2, 2026 by nh13 Contributor • Draft
1
feat(bam): add raw byte access for bam::Record bam
#373 opened Feb 11, 2026 by nh13 Contributor • Draft
2 tasks done
feat(bgzf): add position tracking to MultithreadedWriter bgzf
#371 opened Jan 24, 2026 by nh13 Contributor • Draft
2 tasks done
1
feat(vcf): add vcf_filter example for quality-based filtering vcf
#370 opened Jan 21, 2026 by VedantMadane Loading…
1
perf(bam): add optimized RecordBuf encoding (~4.5x faster writes) bam
#367 opened Jan 9, 2026 by nh13 Contributor • Draft
fasta/io/indexed_reader: Use raw byte reading for faster queries fasta
#365 opened Jan 2, 2026 by nh13 Contributor • Draft
2 tasks done
2
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