Notes Programs

Nextflow installation

curl -s https://get.nextflow.io | bash

chmod +x nextflow

Quality controll

module load bioinfo-tools Nextflow/20.10.0 MultiQC/1.12 fastp/0.23.2 tmux

Pipeline

bioinfo-tools Nextflow/20.10.0 picard/2.27.5 bwa-mem2/2.2.1-20211213-edc703f samtools/1.14 GATK/4.3.0.0 bcftools/1.14