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Deprecate unused classes and corresponding tutorials, revise RandomVariable tutorial - #677

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cdc-mitzimorris merged 34 commits into
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mem_deprecate_classes
Feb 7, 2026
Merged

cdc-mitzimorris merged 34 commits into
mainfrom
mem_deprecate_classes

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@cdc-mitzimorris

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Per discussion in issue #645, remove the following unused classes:

  • pyrenew.model.RtInfectionsRenewalModel
  • pyrenew.model.HospitalAdmissionsModel
  • pyrenew.latent.HospitalAdmissions
  • pyrenew.observation.PoissonObservation

Removed corresponding unit tests.

This also requires removing several tutorials as well as changing the Custom Random Variables tutorial. For the latter, I have rewritten it so that it is a general presentation of PyRenew's RandomVariable metaclass. As part of this PR, I have also updated docs/index.md.

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Note, this PR shouldn't be reviewed until PR #650 has landed.

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codecov Bot commented Feb 6, 2026 •

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 97.46%. Comparing base (27b2964) to head (db657ac).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #677      +/-   ##
==========================================
- Coverage   97.58%   97.46%   -0.12%     
==========================================
  Files          55       51       -4     
  Lines        1697     1540     -157     
==========================================
- Hits         1656     1501     -155     
+ Misses         41       39       -2     
Flag Coverage Δ
unittests 97.46% <ø> (-0.12%) ⬇️

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Thank you for your contribution @cdc-mitzimorris 🚀! Your github-pages is ready for download 👉 here 👈!
(The artifact expires on 2026-02-14T01:00:57Z. You can re-generate it by re-running the workflow here.)

@dylanhmorris

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@cdc-mitzimorris is this ready for review?

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@dylanhmorris - yes, ready for review.

# Conflicts:
#	docs/tutorials/building_multisignal_models.qmd
Comment thread README.md Outdated
Comment thread README.md Outdated
Comment thread docs/tutorials/random_variables.qmd Outdated
Comment thread docs/tutorials/random_variables.qmd

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Thanks @cdc-mitzimorris. A few minor suggestions. Happy for you to implement as you see fit and then merge without re-review.

cdc-mitzimorris and others added 8 commits February 6, 2026 16:46
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
@cdc-mitzimorris
cdc-mitzimorris merged commit cf9416f into main Feb 7, 2026
7 of 8 checks passed
@cdc-mitzimorris
cdc-mitzimorris deleted the mem_deprecate_classes branch February 7, 2026 01:09
@cdc-mitzimorris cdc-mitzimorris changed the title Deprecate unused classes and corresponding tutorials. Deprecate unused classes and corresponding tutorials, revise RandomVariable tutorial Feb 9, 2026
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2 participants