Merge Degas2 Simulation Code - #8

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Fuad-HH wants to merge 152 commits into

mainfrom

Commits on May 22, 2025

saving flux squared for standard deviation
Fuad-HH
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f3935be

Commits on May 23, 2025

particle energy group attribute for flux
Fuad-HH
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7b9d30d

Commits on Jun 17, 2025

copy back material ids
Fuad-HH
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a79124f

Commits on Jun 20, 2025

degas2 physics api
Fuad-HH
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afc0f21
degas2 physics test case
Fuad-HH
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a0ea9f3

Commits on Jun 25, 2025

test discovery at pre test instead of during build
Fuad-HH
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fe4548e

Commits on Jun 30, 2025

Add ionization and charge exchange roughly
gpaynter5004
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a6af786
Fixed mislabelled variables, std::num
gpaynter5004
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5793685
added semicolon
gpaynter5004
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16b33bf
Fixed Pi
gpaynter5004
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75a3e47
Fixed std::numbers being in there still
gpaynter5004
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d440b1f
Changed coef to coef2 correctly
gpaynter5004
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4a8585d
Changed std::log to log
gpaynter5004
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bd4b88c
changed log to logf
gpaynter5004
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ded643c

Commits on Jul 1, 2025

Add logging and test for both moving and colliding
gpaynter5004
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d0a6226
Fix for loop and endl.
gpaynter5004
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4cac6cb
Move for loop
gpaynter5004
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e24d0d5
Change to console log
gpaynter5004
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80c2c29
Put print in the parallel loop
gpaynter5004
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91e485b
Trying to move data off of gpu
gpaynter5004
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fb5cabd
trying to copy gpu view onto cpu
gpaynter5004
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f95edd1
Set more realistic parameters in test
gpaynter5004
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78bca1e
add space in log
gpaynter5004
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d2cd025

Commits on Jul 2, 2025

Change energy_group type to double
gpaynter5004
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116af54
Format output as csv
gpaynter5004
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3a82591
Format output as csv
gpaynter5004
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bc89e8c
Merge remote-tracking branch 'origin/add-atom-phys' into add-atom-phys
gpaynter5004
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c68f773
Fix CSV formatting
gpaynter5004
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0a2da30
Set particle number to 1000
gpaynter5004
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7bb9daf
Rename variables to be more consistent
gpaynter5004
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1c76c89
Set density to more reasonable value
gpaynter5004
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c4c120c

Commits on Jul 3, 2025

Try avoiding calculating the cross sections twice
gpaynter5004
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5466493
Try avoiding calculating the cross sections twice
gpaynter5004
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ebfc1eb
Fix type
gpaynter5004
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7e46ec1
Merge remote-tracking branch 'origin/test-atom-phys' into test-atom-phys
gpaynter5004
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ca6ffe2
Fix typo
gpaynter5004
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62873bf
Fix typo
gpaynter5004
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d57122c
Fix typo
gpaynter5004
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3280456
Try putting declaration earlier
gpaynter5004
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a511e81
Try fixing declaration
gpaynter5004
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4657a90
Clear some non-functional code (note will not compile)
gpaynter5004
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76f2890
Store energy in a kokkos::view inside of DG2Physics.h and add index to ParticleInfo struct.
gpaynter5004
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2cbf183
remove const in function definition
gpaynter5004
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eda9e6a
change sigmas to auto
gpaynter5004
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47b8507
explicitly return a variable previously declared as double
gpaynter5004
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0aaf1d0
Explicitly call DG2Physics.foo
gpaynter5004
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663cd96
Try calling with :: instead
gpaynter5004
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35f7444
Try making sigma a const?
gpaynter5004
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9bd33fd
How about making the functions constant ooh
gpaynter5004
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cdde6b3
How about making the functions constant ooh
gpaynter5004
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f393060
Changing the logging to debug
gpaynter5004
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bb1ce98
Change sigma to double from auto
gpaynter5004
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0fd0350
Temporarily have weight output sigma_cx
gpaynter5004
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abd2fea
Temporarily have weight output sigma_cx inside the function that calculates it
gpaynter5004
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5757790
Weight Back to normal
gpaynter5004
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8cba999
Make the inputs be non-constant for the cross sections
gpaynter5004
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6f20775

Commits on Jul 7, 2025

Replace math functions with kokkos math functions
gpaynter5004
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7673d5b
temporarily have sigma_ion be just the energy and have that saved to weight to debug
gpaynter5004
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16c5bd7
pass the struct not the energy for sigma
gpaynter5004
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714e186
pass the struct not the energy for sigma
gpaynter5004
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bccf642
replace sigma ion with energy again
gpaynter5004
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b0e820e
Properly initialize particle energy
gpaynter5004
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945f542
Initialize particle energy in a not very smart way.
gpaynter5004
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13488dd
Print average of distances
gpaynter5004
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c35e409
Print some statistics on x direction after collision and mean free path.
gpaynter5004
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8e23013
Set loop variables initial value
gpaynter5004
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1aa8241
Set loop variables initial value
gpaynter5004
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7b520ab
Merge remote-tracking branch 'origin/test-atom-phys' into test-atom-phys
gpaynter5004
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f384b05
Define set particle energies function
gpaynter5004
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8aa6171
Add catch2 checks
gpaynter5004
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6c4bd93
Add catch2 checks
gpaynter5004
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5dc49d1
Add Catch:: namespace
gpaynter5004
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a097511
Add Catch::Matchers:: namespace
gpaynter5004
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739453a
try moving tests outside of Kokkos::finalize
gpaynter5004
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d3c7551
return require to befre kokkos finalize
gpaynter5004
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090ded5
Convert main() to TEST_CASE
gpaynter5004
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13c4e24
Make the test fail to confirm it works
gpaynter5004
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7ab2a5f
Return to functional tests
gpaynter5004
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6f81472

Commits on Jul 8, 2025

Comment out logging
gpaynter5004
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818b88d
delete unneeded comment
gpaynter5004
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05fd1b2
Change energy group back to int and stop assigning it to the energy
gpaynter5004
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7141a5c

Commits on Jul 9, 2025

Make a test that tracks one particle until death
gpaynter5004
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e4e70a2
Make a test that tracks one particle until death
gpaynter5004
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ec902e4
Make a test that tracks one particle until death
gpaynter5004
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5c61256
Make a test that tracks one particle until death
gpaynter5004
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f20065b
Make a test that tracks one particle until death
gpaynter5004
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152951a
Make a test that tracks one particle until death
gpaynter5004
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ccf0d7f
Make a test that tracks one particle until death
gpaynter5004
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f831c01
Make a test that tracks one particle until death
gpaynter5004
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4161d6a
Make a test that tracks one particle until death
gpaynter5004
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d7180c9
Merge remote-tracking branch 'origin/test-atom-phys' into test-atom-phys
gpaynter5004
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2a10d0d
Make a test that tracks one particle until death
gpaynter5004
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3dae712
Test avoiding the custom type
gpaynter5004
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742bf0f
Return to particle_info type. Just make the array way to large and leave the extra blank?
gpaynter5004
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d7a5d6f
Return to particle_info type. Just make the array way to large and leave the extra blank?
gpaynter5004
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59dbdab
Change seed
gpaynter5004
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df805b6
Merge pull request #1 from gpaynter5004/test-atom-phys
gpaynter5004
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e40b819
Revert to last finished form
gpaynter5004
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60276e0

Commits on Jul 11, 2025

Merge pull request #2 from gpaynter5004/degas2_physics
Fuad-HH
authored
cd6adc8

Commits on Jul 14, 2025

degas2 main added
Fuad-HH
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7c4d3b3

Commits on Jul 15, 2025

separated the impl header from the cpp file
Fuad-HH
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cb9c1d8
fix linking error
Fuad-HH
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59ed1f2
first draft of degas2
Fuad-HH
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bf1e8fc

Commits on Jul 17, 2025

Code in the "get_field_values" function
gpaynter5004
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4f9cd7e
Add comments and add the headers for file I/O.
gpaynter5004
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f168001

Commits on Jul 18, 2025

Update degas2-main.cpp
gpaynter5004
authored
f6ce9b6

Commits on Jul 22, 2025

Commits on Jul 23, 2025

Implement rejection testing for the collision new velocity
gpaynter5004
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27c85cd
Fix formatting and add comment
gpaynter5004
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70bf3e7
Define max_sigma_cx
gpaynter5004
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231f36c

Commits on Jul 24, 2025

specular reflection
Fuad-HH
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603dc73
uniform 3d distribution over the whole domain
Fuad-HH
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5eae254
Merge pull request #3 from gpaynter5004/degas2_physics
Fuad-HH
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e98a392
Revert "Degas2 physics Field Value Inputting"
Fuad-HH
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79dd7f6
Merge pull request #4 from Fuad-HH/revert-3-degas2_physics
Fuad-HH
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0a7b8de
Reapply "Degas2 physics Field Value Inputting"
Fuad-HH
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13d0bef
Merge branch 'degas2_physics' of github.com:Fuad-HH/PumiUMTally into degas2_physics
Fuad-HH
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5063130
sample initial energy
Fuad-HH
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48e7aaf
collide or sample new distance based on if reached destination or not
Fuad-HH
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c3e36b8
multiply contribution with alpha factor
Fuad-HH
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8bdb038
Update degas2-main.cpp
gpaynter5004
authored
baee046

Commits on Jul 25, 2025

Set the alpha to actually update
gpaynter5004
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c7fc5e1
Fix formatting
gpaynter5004
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b5852dc
Bug fix: random_pool, uniform source distribution, NEEDS TO FIX: illegal memory access
Gabe J. Paynter
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952647d
Merge remote-tracking branch 'origin/degas2_physics' into degas2_physics
gpaynter5004
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5a9be24

Commits on Jul 30, 2025

Commits on Aug 1, 2025

Fix particle deleting due to improper definitions of igin and destination position. NEED TO FIX: new issue of particles deleting
gpaynter5004
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f13992a

Commits on Aug 8, 2025

Commits on Aug 21, 2025

fix bugs
Fuad-HH
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9ee65a6

Commits on Aug 22, 2025

use isotropically sampled initial direction
Fuad-HH
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1607890

Commits on Apr 29, 2026

merge Gabe's degas2 physics
Fuad-HH
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07806e6
Enhance CI workflows with additional logging and configuration updates
Fuad-HH
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e43b841

Commits on Apr 30, 2026

Update CMakeLists.txt to link test_degas2_physics with pumipic library
Fuad-HH
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f2bce18
Remove pull_request triggers from CI workflows
Fuad-HH
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7afdf83
Add LD_LIBRARY_PATH to CI workflow environment
Fuad-HH
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1154558
Update static analysis workflow dependent on test's success
Fuad-HH
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1440b87
add OpenMP environment variables before running tests
Fuad-HH
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2435668
branch-specific triggers for main
Fuad-HH
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cdbaae7
debug print particle locations
Fuad-HH
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65cea8b
update tolerance for position mean check
Fuad-HH
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d56922a
format degas2 physics changes
Fuad-HH
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570b325
added dg2 physics format git-blame ignore
Fuad-HH
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11e8eca
moved get centroid method to impl header
Fuad-HH
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3fe481f
Refactor degas2-main.cpp
Fuad-HH
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de78f4c

Commits on May 1, 2026

fix function signature
Fuad-HH
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9c39acf

Commits on Jun 10, 2026

refactor fields struct
Fuad-HH
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99fb85c