cichlid-file-management

Shared utilities for the McGrath lab cichlid pipeline: FileManager (project directory layout + rclone-backed Dropbox I/O) and LogParser.

Both the Raspberry Pi data-collection repo and the bower_building_ethology analysis package depend on this, so the directory contract lives in one place.

Install

pip install git+https://github.com/McGrathLab/cichlid-file-management.git

For local development against a checkout:

pip install -e .

Use

from cichlid_file_management import FileManager, LogParser

Requirements

• Python 3.8+
• pandas
• rclone on the PATH (invoked via subprocess for cloud I/O; installed separately)