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@NDSU-Geddes-Lab

NDSU Geddes Lab

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  1. brb-libprep brb-libprep Public

    Automated vs manual comparison of amplicon library preparation.

    1

  2. cultured-microbe-identification cultured-microbe-identification Public

    Identify cultured microbes and calculate their purity

    R

  3. plasmid-id plasmid-id Public

    For identifying plasmid IDs and deconvoluting PCR1 barcodes in plasmid ID sequencing protocol

    Python

  4. eng-potential-vector eng-potential-vector Public

    Evaluation of engineering potential in undomesticated microbes with VECTOR.

    Jupyter Notebook

  5. Mia_thesis_files Mia_thesis_files Public

    These are the scripts I used to visualize SDW and establish genospecies using ANI.

    R

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