GitHub - NDSU-Geddes-Lab/Mia_thesis_files: These are the scripts I used to visualize SDW and establish genospecies using ANI.

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
ROARY_core_gene_plot		ROARY_core_gene_plot
ROARY_shell_gene_plot.R		ROARY_shell_gene_plot.R
ROARY_soft_gene_plot.R		ROARY_soft_gene_plot.R
ROARY_total_gene_plot.r		ROARY_total_gene_plot.r
SDW plotting.R		SDW plotting.R
chromosome_all_vs_all.R		chromosome_all_vs_all.R
local_r_stuff.Rproj		local_r_stuff.Rproj
stacked_bar_chart.R		stacked_bar_chart.R
sym_roary_no_G22_summary.csv		sym_roary_no_G22_summary.csv
sym_roary_no_g22_mongolense_summary.csv		sym_roary_no_g22_mongolense_summary.csv
sym_roary_no_mongolense_summary.csv		sym_roary_no_mongolense_summary.csv
sym_roary_summary.csv		sym_roary_summary.csv