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areewitoelar edited this page Mar 16, 2026 · 4 revisions

Getting Started

Requirements

  • MATLAB R2022b or later
    • Image Processing Toolbox (NANSEN)
    • Statistics Toolbox (NANSEN)
  • Python 3.9 or later (Please refer to this table for an overview of versions compatible with your MATLAB release)

Installation

  • Clone this repository and run:
sharebrain_install

Modules

NANSEN to NWB

  1. NANSEN branch: dev
  2. NANSEN-SHAREbrain module
  3. NANSEN-NWB module (requires MATNWB)

NANSEN to openMINDS / EBRAINS

  1. openMINDS-MATLAB
  2. openMINDS-KG-Sync
  3. openMINDS-MATLAB-GUIDE
  4. EBRAINS_MATLAB

Overview

  1. Workflow Diagram
  2. Workflow steps

Getting Started

  1. Requirements
  2. Installation
  3. Modules

Tutorials

SHAREBrain Workflow

  1. Create NANSEN project
  2. Add metadata
  3. Convert and standardise data
  4. Organize data files in a BIDS-like manner
  5. Request dataset curation
  6. Upload data

SHAREbrain modules

  1. openMINDS_MATLAB

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