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SHAREbrain workflow

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areewitoelar edited this page Nov 6, 2025 · 3 revisions

Create NANSEN project

1. Create a NANSEN project/dataset + connect to a EBRAINS data bucket

Todo: Link to NANSEN setup tutorial and/or video

Add metadata

2a. Add metadata in NANSEN

Todo: Link to Tutorial in NANSEN

2b. Add metadata in openMINDS_MATLAB_GUIDE

2c. Add metadata in EBRAINS Metadata Wizard

Convert and standardise data

3a. Create a data conversion pipeline in NANSEN

Todo: Link to Tutorial in NANSEN

3b. Convert data programmatically using PyNWB, MatNWB and or NeuroConv

Todo: Link to repositories

3c. Convert data using NWB Guide

BIDS

Reorganize data into a BIDS format

Request dataset curation

4. Curation Request

Request dataset curation via the EBRAINS curation team

5. Organize data files in a BIDS-like manner

Upload data

6. Upload data to EBRAINS

Overview

  1. Workflow Diagram
  2. Workflow steps

Getting Started

  1. Requirements
  2. Installation
  3. Modules

Tutorials

SHAREBrain Workflow

  1. Create NANSEN project
  2. Add metadata
  3. Convert and standardise data
  4. Organize data files in a BIDS-like manner
  5. Request dataset curation
  6. Upload data

SHAREbrain modules

  1. openMINDS_MATLAB

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