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SHAREbrain workflow

areewitoelar edited this page Nov 6, 2025 · 3 revisions

Create NANSEN project

1. Create a NANSEN project/dataset + connect to a EBRAINS data bucket

Todo: Link to NANSEN setup tutorial and/or video

Add metadata

2a. Add metadata in NANSEN

Todo: Link to Tutorial in NANSEN

2b. Add metadata in openMINDS_MATLAB_GUIDE

2c. Add metadata in EBRAINS Metadata Wizard

Convert and standardise data

3a. Create a data conversion pipeline in NANSEN

Todo: Link to Tutorial in NANSEN

3b. Convert data programmatically using PyNWB, MatNWB and or NeuroConv

Todo: Link to repositories

3c. Convert data using NWB Guide

BIDS

Reorganize data into a BIDS format

Request dataset curation

4. Curation Request

Request dataset curation via the EBRAINS curation team

5. Organize data files in a BIDS-like manner

Upload data

6. Upload data to EBRAINS

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