Delete unused examples + clean up examples#277
Open
glwagner wants to merge 9 commits into
Open
Conversation
Removes ten standalone examples that are now covered by tests, doctests, or the surviving end-to-end simulations (download_glorys_data, ecco_inspect_*, generate_bathymetry, generate_surface_fluxes, idealized_single_column, inspect_JRA55_data, inspect_woa_*, mediterranean_simulation_with_ecco_restoring, meridional_heat_transport_ecco). Updates the remaining examples (global_climate_simulation, near_global_ocean_simulation, one_degree_simulation) to: - pass Fields, AbstractOperations, and Observables directly to `heatmap!` (Oceananigans Makie extension fills immersed land cells with `NaN`), - use unicode subscripts (uᵒᶜ/vᵒᶜ, uᵃᵗ/vᵃᵗ, uˢⁱ) for component-specific velocities and temperatures, - bundle multi-component initialization through a single MetadataSet and a `JRA55PrescribedLand` component. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Builds a real `ocean_simulation` on a small LatitudeLongitudeGrid and runs `set!(ocean.model, mset)` with a multi-component ECCO4Monthly MetadataSet, so the routing claim is actually exercised. The expected output reports rounded min/max/mean of `T`, which is stable across runs at this grid resolution. The sea-ice route is described in a comment alongside the call rather than executed, because no existing test/doctest exercises the ECCO sea-ice download path. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
glwagner
changed the title
MetadataSet
glwagner
added
the
build all examples
Codecov Report❌ Patch coverage is
📢 Thoughts on this report? Let us know! |
navidcy
approved these changes
May 22, 2026
3 tasks
This was referenced May 23, 2026
Member
|
I took the Metatdatset improvements + Metadatase-related fixes in examples into #283. I suggest we merge that and then continue here with visualization improvements, variable changes etc. I did that because building all examples takes ~7hrs so iterating is cumbersome. I also wanna get a docs built on main that succeeds because it's been a while and test whether #237 fixes the issue of tagged releases not having a Docs version; see #60. |
navidcy
added a commit
that referenced
this pull request
May 24, 2026
* pull some changes from #277 * Update make.jl
navidcy
changed the title
MetadataSet
Member
|
Is it true that Makie extension takes observables? |
Member
Author
Can you clarify? Syntax like this: en = @lift e[$n]
hm = heatmap!(axe, en, colorrange = (0, 1e-3), colormap = :solar, nan_color=:lightgray)is used in all the oceananigans, breeze examples. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
global_climate_simulation.jl,near_global_ocean_simulation.jl, andone_degree_simulation.jl:heatmap!(Oceananigans Makie extension auto-NaNs immersed land cells),uᵒᶜ,uᵃᵗ,uˢⁱ, etc.),one_degree_simulation, drive both ocean and sea-ice init from oneMetadataSetand add aJRA55PrescribedLandcomponent.```juliablock in theset!(model, ::MetadataSet, names)docstring with a runnable```jldoctestthat builds a realocean_simulation, callsset!(ocean.model, mset)with a multi-component ECCO4MonthlyMetadataSet, and reports roundedmin/max/meanof the resulting temperature field. The sea-ice route is mentioned in a comment alongside the call (no existing test/doctest exercises the ECCO sea-ice download path, so we don't run it here).