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Compute_Rate_Matrix_Python

Quick python version of rate matrix calculation code

Requires Python 3.6 (Anaconda ideally)

Uses: Numpy, Scipy, Pandas, h5py and Numba

Compute_Rate_Matrix_Python_HDF5 contains the model files used for data generation.

Compute_Rate_Matrix_Python is a model testing setup for smaller scale simulations.

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Public repo for code relevant to "Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development"

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