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Pull requests: bgruening/galaxytools

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Pull requests list

Add sRNAtoolbox tools
#1977 opened Aug 31, 2026 by SantaMcCloud Contributor Loading…
3 of 5 tasks
add chewtree tool: phylogenetic tree from chewBBACA allele profiles
#1973 opened Aug 30, 2026 by bgruening Owner Loading…
5 tasks
10
Add DNA Foundation Models
#1965 opened Aug 24, 2026 by aerdasaliko • Draft
3 of 5 tasks
6
Add simorgh
#1964 opened Aug 23, 2026 by nilchia Collaborator • Draft
3 of 5 tasks
11
Updating chemicaltoolbox/openbabel from version 3.1.1 to 3.2.1
#1962 opened Aug 17, 2026 by RZ9082 Collaborator Loading…
2 of 5 tasks
3
Updating chemicaltoolbox/openbabel from version 3.1.1 to 3.2.1
#1959 opened Aug 17, 2026 by gxydevbot Contributor Loading…
Updating tools/llm_hub from version 2.53.0 to 3.6.0
#1955 opened Aug 14, 2026 by gxydevbot Contributor Loading…
6
llm_hub: add upfront WARN-ONLY input-overflow check against max_context
#1943 opened Jul 30, 2026 by arash77 Contributor • Draft
3 of 5 tasks
6
add chewtree tool: phylogenetic tree from chewBBACA allele profiles
#1937 opened Jul 27, 2026 by paulzierep Contributor Loading…
3 of 5 tasks
3
Add ecolishigatoxintyper
#1936 opened Jul 27, 2026 by paulzierep Contributor Loading…
3 of 5 tasks
1
Updating tools/kraken_ocr from version 7.0.2 to 7.0.3
#1935 opened Jul 27, 2026 by gxydevbot Contributor Loading…
7
mumemto: auto-generated tool wrapper (issue #1929)
#1931 opened Jul 25, 2026 by github-actions Bot Loading…
@SaimMomin12
57
add ketos_ocr suite (the model training part of kraken-ocr)
#1927 opened Jul 24, 2026 by IvoLeist Contributor Loading…
3 of 5 tasks
Add LiteLLM embedding model support to RAG retriever
#1920 opened Jul 17, 2026 by arash77 Contributor Loading…
16
Updating tools/rna_tools/trna_prediction from version 2.0.12 to 2.0.13
#1918 opened Jul 13, 2026 by gxydevbot Contributor Loading…
Update logan search_proteins to 1.3.0
#1902 opened Jun 30, 2026 by SaimMomin12 Collaborator Loading…
3 of 5 tasks
5
Updating tools/trim_galore from version 0.6.10 to 2.3.0
#1900 opened Jun 29, 2026 by gxydevbot Contributor Loading…
Add custom server support to chatGPT tool
#1881 opened Jun 1, 2026 by arash77 Contributor • Draft
Addresses https://github.com/galaxyproject/tools-iuc/issues/7999
#1880 opened May 28, 2026 by scottcain Loading…
3 of 5 tasks
12
Fix mOTUs wrapper
#1869 opened May 18, 2026 by Minamehr Contributor Loading…
3 of 5 tasks
18
Update trim galore to the latest Rust based version esg4stars
#1862 opened May 11, 2026 by bgruening Owner Loading…
5 tasks
3
update ViennaRNA
#1851 opened Apr 26, 2026 by bgruening Owner Loading…
5 tasks
6
Image Magick conversion: fix missing font error for svg conversion
#1834 opened Apr 8, 2026 by Delphine-L Contributor Loading…
5 tasks
2
Update 3Dtrees: Detailview to v1.1.1
#1831 opened Apr 7, 2026 by kgerb Collaborator Loading…
3 of 5 tasks
5
Update wget in get_pdb to 1.25.0
#1822 opened Mar 23, 2026 by RZ9082 Collaborator Loading…
2 of 5 tasks
8
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