Search results

CIRIquant.utils.ConfigError: Tool: java need to be specified

Status: Open.

#81 In bioinfo-biols/CIRIquant;

· adarsh-pp opened on May 24, 2026

Bug Report: samtools index failed — "Region ... cannot be stored in a bai index"

Status: Open.

#80 In bioinfo-biols/CIRIquant;

· wangdachui221 opened on Nov 10, 2025

Single-read data

Status: Open.

#79 In bioinfo-biols/CIRIquant;

· pengyan19 opened on Sep 16, 2025

All circRNAs have 1.000 bsj

Status: Open.

#77 In bioinfo-biols/CIRIquant;

· jasperverwilt opened on May 21, 2025

KeyError: 'chr1:1669664|1734835'

Status: Open.

#76 In bioinfo-biols/CIRIquant;

· Truman11Zeng opened on May 7, 2025

missing GMM in RNase R Correction

Status: Open.

#75 In bioinfo-biols/CIRIquant;

· yiluyucheng opened on Mar 17, 2025

I got error during ciriquant DEG (Error in df2.shrunk[ok] <- fit$df2.shrunk : replacement has length zero)

Status: Open.

#74 In bioinfo-biols/CIRIquant;

· Hyunjinggg opened on Jan 2, 2025

symbol lookup error in Perl

Status: Open.

#73 In bioinfo-biols/CIRIquant;

· Shuixin-Li opened on Oct 30, 2024

Some questions about the results of ciriquant

Status: Open.

#72 In bioinfo-biols/CIRIquant;

· mysolid23 opened on Sep 23, 2024

I used the parameter --bed with circAtlas bed file, the outputs are always "KeyError: '[circAtlas ID]'"

Status: Open.

#70 In bioinfo-biols/CIRIquant;

· DooYal opened on Aug 6, 2024

install CIRIquant using the recommend way

Status: Open.

#69 In bioinfo-biols/CIRIquant;

· mysolid23 opened on Jun 22, 2024

invalid syntax in hisat2_read_statistics.py

Status: Open.

#67 In bioinfo-biols/CIRIquant;

· qj009 opened on Jun 10, 2024