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[BUG] Wrong squeeze dimension in AptaTrans.forward()

Status: Open.

#439 In gc-os-ai/pyaptamer;

· ritankarsaha opened on Apr 17, 2026

[BUG] Monkey-patching nn.ModuleList.forward in AptaTrans._make_encoder breaks JIT and device transfer

Status: Open.

#438 In gc-os-ai/pyaptamer;

· direkkakkar319-ops opened on Apr 17, 2026

[BUG]: Potential infinite loop in candidate generation

Status: Open.

#434 In gc-os-ai/pyaptamer;

· Chetansahney opened on Apr 15, 2026

[ENH] Moving APIDataset to inherit from a base dataset object

maintenance

Status: Open.

#430 In gc-os-ai/pyaptamer;

· siddharth7113 opened on Apr 15, 2026

[BUG] load_pretrained_weights() uses os.path.relpath(), making weights path CWD-dependent

Status: Open.

#428 In gc-os-ai/pyaptamer;

· rupeshca007 opened on Apr 15, 2026

[BUG] Two malformed ValueError messages in PSeAAC.__init__: missing spaces make error output confusing

Status: Open.

#424 In gc-os-ai/pyaptamer;

· rupeshca007 opened on Apr 15, 2026

[BUG] GreedyEncoder.get_test_params() param0 missing required max_len; type annotation inconsistent with _transform logic

bugSomething isn't workingSomething isn't working

Status: Open.

#421 In gc-os-ai/pyaptamer;

· rupeshca007 opened on Apr 15, 2026

[ENH] Replace print() statements with Python logging module

enhancementNew feature or requestNew feature or request

Status: Open.

#416 In gc-os-ai/pyaptamer;

· ChandanKT-git opened on Apr 14, 2026

[BUG](violation): rna2vec silently drops short sequences

bugSomething isn't workingSomething isn't working

Status: Open.

#415 In gc-os-ai/pyaptamer;

· direkkakkar319-ops opened on Apr 14, 2026

Enhance error handling in pdb_to_seq_uniprot

enhancementNew feature or requestNew feature or request

Status: Open.

#414 In gc-os-ai/pyaptamer;

· Aryansangwan23 opened on Apr 14, 2026

[BUG]custom pdb_path ignored in _1gnh loader and inconsistent loader interfaces

Status: Open.

#410 In gc-os-ai/pyaptamer;

· DashratRajpurohit opened on Apr 14, 2026

[BUG] pairs_to_features lacks input validation for malformed inputs

Status: Open.

#408 In gc-os-ai/pyaptamer;

· MayankDew08 opened on Apr 14, 2026