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RichStudio

R Shiny app for integrative enrichment analysis and visualization of multiple gene datasets

App Overview:

Upload files

  • Upload either DEG sets or enrichment results to the app
    • Supports file or text uploads
  • Keep track of all uploaded/created files
    • Rename/remove files
    • View as searchable table
    • Export as .txt, .csv, or .tsv

Enrichment

  • Perform gene enrichment from DEG sets or gene lists
    • Supports GO, KEGG, and Reactome annotation databases
    • Supports BP, MF, CC ontologies
    • 20 different supported species (human, mouse, pig, etc.)

Cluster

  • Cluster enrichment results by gene overlap
    • Supports Kappa clustering

Visualizations

Enrichment results

  • Bar plot
  • Dot plot
  • Network plot
  • Heatmap

Cluster results

  • Comprehensive cluster heatmap
  • Individual term heatmap

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