Genex-Eirene coupling - #4

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jRoeltgen wants to merge 48 commits into

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genex_development

Commits on Mar 26, 2026

Add function and test to convert eirene source units to SI
jRoeltgen
committed
926b1cd
Add a couple unit tests for main coupling
jRoeltgen
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8c5ccaa
Change get_genex_species to use already known parameters
jRoeltgen
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00a5c4b

Commits on Apr 2, 2026

Unit tests for genex_eirene_coupling pass
jRoeltgen
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6b1ba33

Commits on Apr 15, 2026

Add test for temperature_mapping_utils
jRoeltgen
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237d6ad
add test for SourcePostProcessor - passes
jRoeltgen
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2fc90e6

Commits on Apr 22, 2026

Commits on Apr 23, 2026

Add some corrections to norm, function to convert to SI, and wait for initial load
jRoeltgen
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4296d13
Move reading tau into load from main
jRoeltgen
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83ac0e2
Unit test passes. Allow iteration of time index for testing. Wait for initial genex data. Optimize read with dask.
jRoeltgen
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14e45ad
Remove commented code
jRoeltgen
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fe04278
Returned tau was not unitless - strip units
jRoeltgen
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f02c78c
Returned tau was not unitless - strip units
jRoeltgen
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bbd1c6a
Strip whitespace from species to compare
jRoeltgen
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6d152fb
Optimize interpolation: build triangulation once and load more efficiently
jRoeltgen
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ac7c4af

Commits on Apr 24, 2026

Add better methods to prevent race conditions
jRoeltgen
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a375058

Commits on Apr 30, 2026

specify dimensions in write_sources_nc arguments
jRoeltgen
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7db10c0

Commits on May 1, 2026

Commits on Jun 25, 2026

Commits on Jun 26, 2026

Commits on Jun 30, 2026

Add SumTemp=False functionality and tests
jRoeltgen
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dc38262

Commits on Jul 2, 2026

Commits on Jul 4, 2026

Update README and remove comments
jRoeltgen
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7aa18b6

Commits on Jul 8, 2026

Change 0 ref_mask to a more tolerant mask that allows density to become 0
jRoeltgen
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44da734
Add integration test for GENE-X Eirene coupling.
jRoeltgen
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db18811
Add some documentation
jRoeltgen
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955ad2b

Commits on Jul 21, 2026

More robustly add velocities
jRoeltgen
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f781056
Restore original fort.31
jRoeltgen
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6196fb8
Separate tracked fort.31 and fort.31 used by test
jRoeltgen
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b859800

Commits on Aug 11, 2026

Commits on Aug 13, 2026

Fix error caused by python trying to read new 'part' after n and q_perp were validated
jRoeltgen
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2bef432