Repositories list

• pdbmap

  Public
  Perl

  •11 fork•22 stars•1313 issues•00 pull requests•Updated May 6, 2026May 6, 2026

• pipeline_download_scripts

  Public
  BASH scripts to download required files for the psbadmin and pdbmap code

  Shell

  •00 forks•00 stars•22 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• CapraLab.github.io

  Public
  Capra Lab website

  HTML

  •

  MIT License

  •163163 forks•00 stars•00 issues•00 pull requests•Updated Aug 6, 2025Aug 6, 2025

• NEFL_Haplotype_Editing

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 9, 2025Jan 9, 2025

• lab-manuscript-template

  Public
  An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)

  TeX

  •

  MIT License

  •22 forks•2222 stars•00 issues•00 pull requests•Updated Nov 13, 2023Nov 13, 2023

• resources

  Public
  This directory includes useful tutorials and resources for working in the Capra lab.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 5, 2023Jan 5, 2023

• cosmis

  Public
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3…

  Python

  •

  GNU General Public License v3.0

  •55 forks•1616 stars•00 issues•00 pull requests•Updated Nov 11, 2022Nov 11, 2022

• PSB

  Public
  Personalized Structural Biology approach for rare coding variant interpretation, based on protein structural context and MD simulations.

  Shell

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 23, 2022Jun 23, 2022

• cosmis_app

  Public
  Dash based web application for interactive use of the COSMIS framework

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 28, 2021Sep 28, 2021

• DiGePred

  Public
  Random Forest classifier designed to predict pairs of human genes capable to causing a digenic disease when carrying rare variants simultaneously. DiGePred has …

  Python

  •22 forks•88 stars•00 issues•00 pull requests•Updated Aug 19, 2021Aug 19, 2021

• VIPUR

  Public
  A method for identifying deleterious protein variation.

  C++

  •55 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2016Feb 23, 2016