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@KolmogorovLab Kolmogorov lab at NCI

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    10 repositories

    • Wakhan

      Public
      Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
      Python
      •
      MIT License
      •5•74•24•0•Updated Apr 12, 2026Apr 12, 2026

    • Severus

      Public
      A tool for somatic structural variant calling using long reads
      Python
      •
      Other
      •13•168•38•3•Updated Apr 9, 2026Apr 9, 2026

    • Padfoot

      Public
      SV and CNA annotation tool - under development
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 12, 2026Mar 12, 2026

    • TreeHarmonizer

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 10, 2026Mar 10, 2026

    • minda

      Public
      Python
      •
      Other
      •4•27•4•1•Updated Mar 1, 2026Mar 1, 2026

    • Lumos

      Public
      Nextflow
      •0•6•3•0•Updated Feb 20, 2026Feb 20, 2026

    • hapcorrect

      Public
      Haplotypes phase-switching errors correction in long reads
      Python
      •
      MIT License
      •0•5•0•0•Updated Jan 24, 2025Jan 24, 2025

    • hapdup

      Public
      Pipeline to convert a haploid assembly into diploid
      Python
      •
      Other
      •12•111•8•0•Updated Jan 23, 2025Jan 23, 2025

    • strainy

      Public
      Graph-based assembly phasing
      Python
      •
      Other
      •6•2•0•0•Updated Oct 31, 2024Oct 31, 2024

    • hapdiff

      Public
      SV calling for diploid assemblies
      Python
      •
      MIT License
      •3•31•4•0•Updated Mar 22, 2024Mar 22, 2024
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