Repositories list

• RajLab-Bibliography

  Public
  Bibliography files for RajLab papers

  TeX

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 29, 2026May 29, 2026

• EBM-Nexis-old

  Public archive
  Nexis code to be run on EBM time series, including forward/inverse and individual/cohort fitting

  Jupyter Notebook

  •22 forks•00 stars•00 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• Stage-based-Network-Diffusion-old

  Public archive
  Stage-based Network Diffusion (StaND) for Alzheimer's tau progression modeling.

  Python

  •

  Apache License 2.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• Tau_Transport

  Public
  Code and data files required to generate all results for the axonal transport regulation project

  MATLAB

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 20, 2026May 20, 2026

• NTM-Human

  Public
  Network Transport Model of Tau spread on the human brain connectome

  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• NTM_ru

  Public
  Network Transport Model of Tau spread including cellular release and uptake mechanisms

  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 4, 2026Feb 4, 2026

• CellTypeVulnerability

  Public
  Mouse tauopathy cell-type regional vulnerability project

  MATLAB

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 31, 2025Jan 31, 2025

• Nexis

  Public
  Code for running the extended Network Diffusion Model (eNDM)

  MATLAB

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 15, 2025Jan 15, 2025

• Nexis-Human

  Public
  Nexis set up to fit to individual human data (gene or global)

  Jupyter Notebook

  •11 fork•11 star•00 issues•00 pull requests•Updated Jan 8, 2025Jan 8, 2025

• MISS-Pipeline

  Public
  Method for mapping cell types across brain using ISH atlases

  MATLAB

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 8, 2025Jan 8, 2025

• journalclub

  Public
  Journal Club

  schedulelabjournals+ 1

  schedulelabjournalsarticles

  GNU General Public License v3.0

  •77 forks•44 stars•00 issues•00 pull requests•Updated Sep 9, 2024Sep 9, 2024

• IntDegSeg

  Public
  A repository for the article Integrative, Segregative, and Degenerate Harmonics of the Structural Connectome

  MATLAB

  •

  MIT License

  •11 fork•44 stars•00 issues•00 pull requests•Updated Jul 29, 2024Jul 29, 2024

• Joint-structure-function-modeling-in-AD

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2024Apr 9, 2024

• SBI-SGM-clean

  Public
  Jupyter Notebook

  •44 forks•00 stars•00 issues•00 pull requests•Updated Mar 16, 2024Mar 16, 2024

• NexIS_SBI

  Public
  Code for NexIS:SBI (Eventually to merge into main repo.)

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 15, 2024Mar 15, 2024

• SC-from-FC

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 7, 2024Feb 7, 2024

• Brainframe

  Public
  MATLAB

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 19, 2023Sep 19, 2023

• CellTypeConnectivity

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 9, 2023Aug 9, 2023

• cns2023

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2023Jul 18, 2023

• SGMforFMRI

  Public
  A repo for the SGM for fMRI project.

  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2023Jun 9, 2023

• TauDirectionality

  Public
  Network-based model of tau propagation with directionality in the mouse brain

  MATLAB

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2023Feb 10, 2023

• tau-PET-prediction

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jan 28, 2023Jan 28, 2023

• Brainframe_old

  Public
  Matlab functionality for creating 3D human & mouse brain renderings, with many options.

  MATLAB

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 17, 2022Sep 17, 2022

• cns2022

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2022Jul 18, 2022

• cortography

  Public
  Utilities for brain atlas related tasks

  brainatlas

  brainatlas

  Jupyter Notebook

  •

  The Unlicense

  •33 forks•22 stars•66 issues•00 pull requests•Updated Dec 21, 2021Dec 21, 2021

• spectrome-stability

  Public
  Jupyter Notebook

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 10, 2021Nov 10, 2021

• spectrome-revisited

  Public
  Jupyter Notebook

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 10, 2021Nov 10, 2021

• cns2021

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 30, 2021Jun 30, 2021

• spectrome

  Public
  Spectral graph model base code and examples

  spectrumneuroscienceconnectivity+ 2

  spectrumneuroscienceconnectivitybrainconnectome

  Jupyter Notebook

  •

  MIT License

  •55 forks•88 stars•77 issues•22 pull requests•Updated May 19, 2021May 19, 2021

• Human_Brain_Atlases

  Public
  Commonly used human brain atlases as a Datalad dataset

  11 fork•00 stars•00 issues•00 pull requests•Updated Apr 27, 2021Apr 27, 2021