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metabarcoding-pipeline

Here are 7 public repositories matching this topic...

ImagoXV / NanoASV

NanoASV official repo

Updated Mar 12, 2026
Shell

adriantich / MJOLNIR3

Metabarcoding Joining Obitools3 & Linkage Networks In R

metabarcoding edna-pipeline metabarcoding-pipeline

Updated Nov 21, 2025
R

frederic-mahe / nf-pore2taxa

quick taxonomic assignment of Nanopore metabarding data

bioinformatics nanopore nextflow metagenomics microbiome metabarcoding oxford-nanopore cutadapt amplicon-sequencing occurrence-matrix vsearch long-read-sequencing taxonomic-assignment nextflow-pipeline basecalling metabarcoding-pipeline

Updated Aug 4, 2026
Shell

CassandraHjo / Rsearch

Rsearch: An R Interface to VSEARCH supporting visualization and parameter tuning

bioinformatics pipeline clustering fasta fastq metabarcoding amplicon 16s denoising otu vsearch sintax metabarcoding-pipeline unoise

Updated Jul 20, 2026
R

pascoalf / MVeM

Marine Vertebrate eDNA Metabarcoding Pipeline (MVeM)

edna-pipeline metabarcoding-pipeline

Updated Apr 8, 2026
R

AmbrePetit / Metagenomics

The purpose of this repository is the metagenomic analysis of FastQ files

metagenomics metabarcoding metagenomic-analysis metabarcoding-pipeline

Updated Jul 31, 2024
Python

ybaah-biotech / eDNA-sequence-analysis

Python pipeline for eDNA species identification via NCBI BLAST — with LCA taxonomic resolution, uncultured sequence rescue, and alpha-diversity metrics (Shannon H′, Pielou J′).

bioinformatics biopython blast edna ecology metabarcoding environmental-dna nature-conservation ecology-modelling species-identification metabarcoding-pipeline uk-ecology

Updated Jun 11, 2026
Python

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