These projects apply computational modeling, data analysis, and quantitative methods to investigate Alzheimer’s disease biomarkers, pulmonary fibrosis image data, lung squamous cell carcinoma gene-expression profiles, and Middle East Respiratory Syndrome (MERS) disease dynamics.
Lung network model of IPF and pulmonary hypertension, with a research calculator.
In silico screening of natural phytochemicals targeting Integrin-αv for pulmonary fibrosis treatment.
Reproducible validation pipeline for pathway-level IPF signatures with rigorous donor leakage control (Phase 0-3 gates, bulk RNA-seq, PATH B)
MLBioIGE: machine learning + bioinformatics to identify the genetic effect of SARS-CoV-2 on idiopathic pulmonary fibrosis (IPF) patients. Published in Biology Methods and Protocols (Oxford Academic), 2022.
Avalynpharma — independent third-party profile of a public API surface, by API Evangelist. Avalyn Pharma is a clinical-stage biotechnology company developing inhaled therapies for rare and serious respiratory diseases, with a focus on idiopathic pulmonary fibrosis (IPF) and other interstitial lung diseases.
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