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Pull requests: wtsi-npg/p4

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Pull requests list

initial version of script to facilitate reanalyses with README
#409 opened May 8, 2026 by dozy Member Loading…
add perlane (fastq) wtsi stage1
#404 opened Mar 25, 2026 by dkj Member • Draft
single/paired end selection for stage2 samtools import work in progress
#401 opened Feb 13, 2026 by dozy Member Loading…
Bump actions/upload-artifact from 4 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#393 opened Dec 15, 2025 by dependabot Bot Loading…
Bump actions/cache from 4 to 5 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#392 opened Dec 15, 2025 by dependabot Bot Loading…
Bump actions/checkout from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#391 opened Nov 24, 2025 by dependabot Bot Loading…
Add BSD 3-Clause License file
#384 opened Oct 6, 2025 by dkj Member Loading…
2
P4 stage2 init options invalid
#348 opened Aug 21, 2024 by dozy Member Loading…
add optional stage1 methods to allow analysis using product crams as input (instead of default BCL) work in progress
#331 opened Nov 21, 2023 by dozy Member Loading…
@dozy
inheritance of undef parameter values bug duplicate work in progress
#330 opened Nov 21, 2023 by dozy Member Loading…
@dozy
1
add primer_clip_unmap_len_flag and primer_clip_arbitrary_flags to sam…
#327 opened Oct 3, 2023 by dozy Member Loading…
@srl147
pre-alignment collate options work in progress
#268 opened Nov 28, 2019 by dozy Member Loading…
scramble compression flags (bam to cram) work in progress
#266 opened Sep 18, 2019 by dozy Member Loading…
2
introduce post-run cleanup for viv work in progress
#261 opened Apr 12, 2019 by dozy Member Loading…
ProTip! Updated in the last three days: updated:>2026-05-30.