De novo transcriptome of Staurois parvus + DGE + FE
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Apr 17, 2026 - Shell
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de-novo-transcriptome-assembly
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HPC-T-Assembly, a scalable pipeline leveraging high-performance computing (HPC) for de novo transcriptome assembly of large, multi-species RNA-Seq datasets. This tool streamlines the assembly process, optimizing resource allocation and parallelization to handle diverse, complex transcriptomes efficiently.
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Feb 18, 2025 - Python
Code for the analysis of alternative splicing in the developing mammalian brain (Open Biology, 2024), integrating short- and long-read RNA-seq to detect and quantify cell-type–specific splicing events.
rnaseq pacbio alternative-splicing-analysis long-read-sequencing alphafold short-read-sequencing de-novo-transcriptome-assembly mouse-embryo mammalian-brain
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Dec 22, 2025 - Shell
This is the digital version of my master project's logbook that is created by using Streamlit Python package to document all the command lines and codes that I ran to do my project so that other researchers can later reproduce the exact same analysis results
molecular-dynamics-simulation rna-seq-analysis functional-annotation protein-structure-prediction molecular-docking protein-structure-analysis pathway-enrichment-analysis go-enrichment multivariate-statistical-analysis deg-analysis de-novo-transcriptome-assembly
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May 29, 2026 - Python
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