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illumina-450k

Here are 4 public repositories matching this topic...

Pharmaco01 / dna-methylation-minfi-workflow

Exploratory DNA methylation analysis using R and minfi, including quality control, normalization, PCA, and differential methylation analysis.

bioinformatics r epigenetics bioconductor dna-methylation differential-methylation minfi illumina-450k

Updated Aug 9, 2026
Jupyter Notebook

Qasim-Hussain-Code / epigenetic-disease-atlas

An epigenome-wide association study (EWAS) pipeline profiling DNA methylation (5mC) dynamics across post-mortem Alzheimer's brain regions. Investigates cell-type-specific differential methylation and chromatin accessibility correlations, utilizing OLS with robust standard errors and machine learning biomarker panel classification.

feature-selection dna-methylation biomarker-discovery alzheimers-disease functional-annotation epigenomics robust-regression neurodegeneration ewas pathway-enrichment differential-methylation-analysis neuroepigenetics braak-staging post-mortem-brain illumina-450k differentially-methylated-probes gse59685 machine-learning-biomarkers

Updated May 23, 2026
Python

paulYRP / GSE142512

GSE142512 450K and EPIC DNA methylation resources for Bioconductor ExperimentHub. DOI: 10.5281/zenodo.21198533

genomics geo epigenetics bioconductor experimenthub dna-methylation zenodo homo-sapiens summarizedexperiment type-1-diabetes peripheral-blood longitudinal-study illumina-epic illumina-450k methylation-array rangedsummarizedexperiment gse142512

Updated Sep 7, 2026
R

kkamieniecka / ewas-crossarray-harmonise

Reproducible cross-array harmonisation and region detection for longitudinal EWAS (Illumina 450K + EPIC), extending the EWASGalaxy suite

bioinformatics nextflow reproducible-research epigenetics galaxy dna-methylation ewas illumina-epic illumina-450k pharmacoepigenomics

Updated Sep 16, 2026
R

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