AlphaPulldown-CI-CD

Workflow runs for AlphaPulldown-CI-CD

• perf: build HMMER with AlphaFold 3's jackhmmer speed-up patches

  completed successfully:
  AlphaPulldown-CI-CD#1802:Pull request#669openedbyDimaMolod
  feat/hmmer-speedup-patches

  Oct 19, 202615m 25s
  More actions for workflow run 1802

• AlphaPulldown v2.11.0

  completed successfully:
  AlphaPulldown-CI-CD#1801:Release2.11.0publishedbyDimaMolod
  Oct 14, 202626m 22s
  More actions for workflow run 1801

• Merge pull request #668 from KosinskiLab/release/2.11.0

  completed successfully:
  AlphaPulldown-CI-CD#1800:Commit50b508dpushedbyDimaMolod
  main

  Oct 14, 202619m 24s
  More actions for workflow run 1800

• release: 2.11.0

  failed:
  AlphaPulldown-CI-CD#1799:Pull request#668openedbyDimaMolod
  release/2.11.0

  Oct 14, 202616m 5s
  More actions for workflow run 1799

• Merge pull request #667 from KosinskiLab/fix/cluster-check-fold-folders

  cancelled:
  AlphaPulldown-CI-CD#1798:Commit6e4b403pushedbyDimaMolod
  main

  Oct 14, 20266m 45s
  More actions for workflow run 1798

• test: skip AlphaPulldown's own subfolders when the GPU checks look for folds

  completed successfully:
  AlphaPulldown-CI-CD#1797:Pull request#667openedbyDimaMolod
  fix/cluster-check-fold-folders

  Oct 14, 202614m 0s
  More actions for workflow run 1797

• Merge pull request #664 from KosinskiLab/feat/alphapulldown-output-dir

  completed successfully:
  AlphaPulldown-CI-CD#1796:Commit228c5eepushedbyDimaMolod
  main

  Oct 14, 202624m 57s
  More actions for workflow run 1796

• Merge pull request #666 from KosinskiLab/refactor/prediction-adapters

  completed successfully:
  AlphaPulldown-CI-CD#1795:Commit43c0eefpushedbyDimaMolod
  main

  Oct 14, 202624m 11s
  More actions for workflow run 1795

• Merge pull request #665 from KosinskiLab/fix/af2-modelcif-subprocess

  failed:
  AlphaPulldown-CI-CD#1794:Commit1aed0aepushedbyDimaMolod
  main

  Oct 14, 202624m 32s
  More actions for workflow run 1794

• refactor: share session setup and prediction between the two adapters

  completed successfully:
  AlphaPulldown-CI-CD#1793:Pull request#666openedbyDimaMolod
  refactor/prediction-adapters

  Oct 14, 202615m 42s
  More actions for workflow run 1793

• fix: run AF2's ModelCIF conversion without a shell and report it truthfully

  completed successfully:
  AlphaPulldown-CI-CD#1792:Pull request#665openedbyDimaMolod
  fix/af2-modelcif-subprocess

  Oct 14, 202611m 6s
  More actions for workflow run 1792

• feat: keep AlphaPulldown's own files in alphapulldown/ and debug/

  completed successfully:
  AlphaPulldown-CI-CD#1791:Pull request#664openedbyDimaMolod
  feat/alphapulldown-output-dir

  Oct 14, 202615m 26s
  More actions for workflow run 1791

• Merge pull request #663 from KosinskiLab/test/coverage-since-2.10

  completed successfully:
  AlphaPulldown-CI-CD#1790:Commitc9b0d2apushedbyDimaMolod
  main

  Oct 14, 202624m 7s
  More actions for workflow run 1790

• Merge pull request #662 from KosinskiLab/refactor/af3-output-helpers

  completed successfully:
  AlphaPulldown-CI-CD#1789:Commiteef1405pushedbyDimaMolod
  main

  Oct 14, 202622m 1s
  More actions for workflow run 1789

• fix + tests: AF3 fold without ranked samples; cover the scenarios the suites missed

  completed successfully:
  AlphaPulldown-CI-CD#1788:Pull request#663synchronizebyDimaMolod
  test/coverage-since-2.10

  Oct 14, 202614m 50s
  More actions for workflow run 1788

• refactor: move AF3 ModelCIF and storage helpers beside the AF3 outputs

  completed successfully:
  AlphaPulldown-CI-CD#1787:Pull request#662synchronizebyDimaMolod
  refactor/af3-output-helpers

  Oct 14, 202614m 32s
  More actions for workflow run 1787

• fix + tests: AF3 fold without ranked samples; cover the scenarios the suites missed

  failed:
  AlphaPulldown-CI-CD#1786:Pull request#663openedbyDimaMolod
  test/coverage-since-2.10

  Oct 14, 20269m 45s
  More actions for workflow run 1786

• refactor: move AF3 ModelCIF and storage helpers beside the AF3 outputs

  failed:
  AlphaPulldown-CI-CD#1785:Pull request#662openedbyDimaMolod
  refactor/af3-output-helpers

  Oct 14, 202612m 21s
  More actions for workflow run 1785

• Merge pull request #661 from KosinskiLab/fix/backend-options

  completed successfully:
  AlphaPulldown-CI-CD#1784:Commit2414fdepushedbyDimaMolod
  main

  Oct 13, 202621m 0s
  More actions for workflow run 1784

• Merge pull request #660 from KosinskiLab/refactor/af3-runner

  failed:
  AlphaPulldown-CI-CD#1783:Commit9b6d369pushedbyDimaMolod
  main

  Oct 13, 202625m 36s
  More actions for workflow run 1783

• Merge pull request #659 from KosinskiLab/refactor/af3-inputs

  completed successfully:
  AlphaPulldown-CI-CD#1782:Commitfcba0d4pushedbyDimaMolod
  main

  Oct 13, 202619m 29s
  More actions for workflow run 1782

• Merge pull request #658 from KosinskiLab/refactor/af3-outputs

  completed successfully:
  AlphaPulldown-CI-CD#1781:Commit2a09ad3pushedbyDimaMolod
  main

  Oct 13, 202623m 12s
  More actions for workflow run 1781

• fix: report mistyped backend options instead of dropping them

  completed successfully:
  AlphaPulldown-CI-CD#1780:Pull request#661openedbyDimaMolod
  fix/backend-options

  Oct 13, 202613m 0s
  More actions for workflow run 1780

• refactor: move AF3 model running out of the backend

  completed successfully:
  AlphaPulldown-CI-CD#1779:Pull request#660openedbyDimaMolod
  refactor/af3-runner

  Oct 13, 202615m 21s
  More actions for workflow run 1779

• refactor: move AF3 input preparation out of the backend

  completed successfully:
  AlphaPulldown-CI-CD#1778:Pull request#659openedbyDimaMolod
  refactor/af3-inputs

  Oct 13, 202614m 32s
  More actions for workflow run 1778