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iRep runs gradually slower in large-scale batch analysis

Status: Open.

#46 In christophertbrown/iRep;

· luckyfair1 opened on Apr 8, 2026

iRep = 'n.a'

Status: Open.

#45 In christophertbrown/iRep;

· gg0715 opened on Jul 10, 2025

Coverage/Depth limit for running iRep/bPTR

Status: Open.

#44 In christophertbrown/iRep;

· yanchunzhang opened on May 28, 2025

Error with import and looking for advice for batch calculation

Status: Open.

#43 In christophertbrown/iRep;

· ZeWLi opened on Jun 7, 2023

potential issue with np.arange(100,1000,10000) bPTR line 223

Status: Open.

#42 In christophertbrown/iRep;

· mariaelf97 opened on Apr 26, 2023

Difficulties when using iRep with long read data

Status: Open.

#41 In christophertbrown/iRep;

· mshamash opened on Feb 1, 2023

Using GC Skew to reorder contigs

Status: Open.

#37 In christophertbrown/iRep;

· balags1 opened on Jun 22, 2021

how different the rep rates need to be to be considered as such?

Status: Open.

#35 In christophertbrown/iRep;

· xvazquezc opened on Oct 14, 2020

Enquiry on application of IREP to my experiments

Status: Open.

#34 In christophertbrown/iRep;

· samkjm opened on Aug 3, 2020

super low GC bias in many samples results in n/a iRep values

Status: Open.

#33 In christophertbrown/iRep;

· willnotburn opened on Feb 24, 2020

Multiple Sample for bPTR

Status: Open.

#29 In christophertbrown/iRep;

· santoshe1 opened on Mar 5, 2019

Versions on Pypi broken

Status: Open.

#28 In christophertbrown/iRep;

· epruesse opened on Dec 28, 2018